Yutaka Satou

Work

京都大学 / Kyoto University

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准教授 / Associate Professor

Japan

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京都大学 / Kyoto University

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助教授 / Associate Professor

Japan

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京都大学 / Kyoto University

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助手 / Teaching Associate / Research Associate

Japan

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Publications

A master regulatory loop that activates genes in a temporally coordinated manner in muscle cells of ascidian embryos

Development

journal-article

Identification and Classification of Zinc Finger Proteins Encoded in the Genome of an Ascidian

genesis

journal-article

Ascidian embryonic cells with properties of neural-crest cells and neuromesodermal progenitors of vertebrates

Nature Ecology & Evolution

journal-article

BMP signaling is required to form the anterior neural plate border in ascidian embryos

Development Genes and Evolution

journal-article

A digital twin reproducing gene regulatory network dynamics of early Ciona embryos indicates robust buffers in the network

PLOS Genetics

journal-article

A digital twin reproducing gene regulatory network dynamics of early Ciona embryos indicates robust buffers in the network

PLOS Genetics

journal-article

A Manually Curated Gene Model Set for an Ascidian, Ciona robusta (Ciona intestinalis Type A)

Zoological Science

journal-article

Tracing the evolutionary history of blood cells to the unicellular ancestor of animals

Blood

journal-article

Regulators specifying cell fate activate cell cycle regulator genes to determine cell numbers in ascidian larval tissues

Development

journal-article

Protein kinases and protein phosphatases encoded in the Ciona robusta genome

genesis

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Tbx15/18/22 shares a binding site with Tbx6-r.b to maintain expression of a muscle structural gene in ascidian late embryos

Developmental Biology

journal-article

Using linkage logic theory to control dynamics of a gene regulatory network of a chordate embryo.

Scientific reports

journal-article

Cell geometry, signal dampening, and a bimodal transcriptional response underlie the spatial precision of an ERK-mediated embryonic induction

Developmental Cell

journal-article

Cis-regulatory code for determining the action of Foxd as both an activator and a repressor in ascidian embryos

Developmental Biology

journal-article

The gene regulatory system for specifying germ layers in early embryos of the simple chordate

Science Advances

journal-article

Chromosomal Inversion Polymorphisms in Two Sympatric Ascidian Lineages

Genome Biology and Evolution

journal-article

Two distinct motifs for Zic-r.a drive specific gene expression in two cell lineages

Development

journal-article

The genetic program to specify ectodermal cells in ascidian embryos

Development, Growth & Differentiation

journal-article

A gene regulatory network for cell fate specification in Ciona embryos

Current Topics in Developmental Biology

book-chapter

A single-cell analysis of the molecular lineage of chordate embryogenesis

Science Advances

journal-article

Gata is ubiquitously required for the earliest zygotic gene transcription in the ascidian embryo

Developmental Biology

journal-article

The regulatory pathway from genes directly activated by maternal factors to muscle structural genes in ascidian embryos

Development

journal-article

Foxg specifies sensory neurons in the anterior neural plate border of the ascidian embryo

Nature Communications

journal-article

A Nearly Complete Genome of Ciona intestinalis Type A (C. robusta) Reveals the Contribution of Inversion to Chromosomal Evolution in the Genus Ciona

Genome Biology and Evolution

journal-article

A nearly-complete genome of Ciona intestinalis type A (C. robusta) reveals the contribution of inversion to chromosomal evolution in the genus Ciona

Genome Biology and Evolution

journal-article

Initiation of the zygotic genetic program in the ascidian embryo

Semin Cell Dev Biol

journal-article

Controlling Cell Fate Specification System by Key Genes Determined from Network Structure

iScience

journal-article

Dynamics of two key maternal factors that initiate zygotic regulatory programs in ascidian embryos

Developmental Biology

journal-article

Distinct regulation of Snail in two muscle lineages of the ascidian embryo achieves temporal coordination of muscle development

Development

journal-article

Ascidian Zic Genes

Adv Exp Med Biol

journal-article

Microinjection of Exogenous Nucleic Acids into Eggs: Ciona Species

Transgenic Ascidians

other

ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets

Nucleic Acids Res

journal-article

Differential gene expression along the animal-vegetal axis in the ascidian embryo is maintained by a dual functional protein Foxd

PLOS Genetics

journal-article

Tfap2 and Sox1/2/3 cooperatively specify ectodermal fates in ascidian embryos

Development

journal-article

A Maternal System Initiating the Zygotic Developmental Program through Combinatorial Repression in the Ascidian Embryo

PLoS Genet

journal-article

Antagonism between β-catenin and Gata.a sequentially segregates the germ layers of ascidian embryos

Development

journal-article

Dysregulation of a potassium channel, THIK-1, targeted by caspase-8 accelerates cell shrinkage

Biochimica et Biophysica Acta (BBA) - Molecular Cell Research

journal-article

Tfap2 and Sox1/2/3 cooperatively specify ectodermal fates in ascidian embryos

Development

journal-article

Differential temporal control of Foxa.a and Zic-r.b specifies brain versus notochord fate in the ascidian embryo

Development

journal-article

A Maternal System Initiating the Zygotic Developmental Program through Combinatorial Repression in the Ascidian Embryo

PLOS Genetics

journal-article

Guidelines for the nomenclature of genetic elements in tunicate genomes.

Genesis

journal-article

Sustained heterozygosity across a self-incompatibility locus in an inbred ascidian.

Molecular biology and evolution

journal-article

Sustained heterozygosity across a self-incompatibility locus in an inbred ascidian.

journal-article

Guidelines for the nomenclature of genetic elements in tunicate genomes.

journal-article

A Boolean Function for Neural Induction Reveals a Critical Role of Direct Intercellular Interactions in Patterning the Ectoderm of the Ascidian Embryo

PLoS Comput Biol

journal-article

A pipeline for the systematic identification of non-redundant full-ORF cDNAs for polymorphic and evolutionary divergent genomes: Application to the ascidian Ciona intestinalis

Developmental Biology

journal-article

Gene regulatory systems that control gene expression in the Ciona embryo

Proceedings of the Japan Academy Series B-Physical and Biological Sciences

journal-article

Genetic pathways for differentiation of the peripheral nervous system in ascidians

Nature Communications

journal-article

The Apoptotic Initiator Caspase-8: Its Functional Ubiquity and Genetic Diversity during Animal Evolution

Molecular Biology and Evolution

journal-article

A time delay gene circuit is required for palp formation in the ascidian embryo

Development

journal-article

Differential Gene Expression in Notochord and Nerve Cord Fate Segregation in the Ciona intestinalis Embryo

Genesis

journal-article

Multiple Signaling Pathways Coordinate to Induce a Threshold Response in a Chordate Embryo

Plos Genetics

journal-article

Transcriptome dynamics in early embryos of the ascidian, Ciona intestinalis

Developmental Biology

journal-article

A genomic overview of short genetic variations in a basal chordate, Ciona intestinalis

Bmc Genomics

journal-article

Blood System Formation in the Urochordate Ciona intestinalis Requires the Variable Receptor vCRL1

Molecular Biology and Evolution

journal-article

Cis-Acting Transcriptional Repression Establishes a Sharp Boundary in Chordate Embryos

Science

journal-article

High-throughput protein expression screening and purification in Escherichia coli

Methods

journal-article

Blastema induction in aneurogenic state and Prrx-1 regulation by MMPs and FGFs in Ambystoma mexicanum limb regeneration

Developmental Biology

journal-article

CIPRO 2.5: Ciona intestinalis protein database, a unique integrated repository of large-scale omics data, bioinformatic analyses and curated annotation, with user rating and reviewing functionality

Nucleic Acids Research

journal-article

Expression of neuropeptide- and hormone-encoding genes in the Ciona intestinalis larval brain

Developmental Biology

journal-article

Genomic cis-regulatory networks in the early Ciona intestinalis embryo

Development

journal-article

High-throughput sequence analysis of Ciona intestinalis SL trans-spliced mRNAs: Alternative expression modes and gene function correlates

Genome Research

journal-article

The ANISEED database: Digital representation, formalization, and elucidation of a chordate developmental program

Genome Research

journal-article

Caspases: evolutionary aspects of their functions in vertebrates

Journal of Fish Biology

journal-article

Gene regulatory networks in the early ascidian embryo

Biochimica Et Biophysica Acta-Gene Regulatory Mechanisms

journal-article

Gene regulatory networks underlying the compartmentalization of the Ciona central nervous system

Development

journal-article

M-Ras evolved independently of R-Ras and its neural function is conserved between mammalian and ascidian, which lacks classical Ras

Gene

journal-article

A cDNA resource for the cephalochordate amphioxus Branchiostoma floridae

Development Genes and Evolution

journal-article

Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations

Genome Biology

journal-article

Regulatory genes in the ancestral chordate genomes

Development Genes and Evolution

journal-article

The amphioxus genome and the evolution of the chordate karyotype

Nature

journal-article

The amphioxus genome illuminates vertebrate origins and cephalochordate biology

Genome Research

journal-article

The amphioxus genome illuminates vertebrate origins and cephalochordate biology (vol 18, pg 1100, 2008)

Genome Research

journal-article

Analysis of large scale expression sequenced tags (ESTs) from the anural ascidian, Molgula tectiformis

Developmental Biology

journal-article

Axial patterning in cephalochordates and the evolution of the organizer

Nature

journal-article

Conserved function of caspase-8 in apoptosis during bony fish evolution

Gene

journal-article

Further EST analysis of endocrine genes that are preferentially expressed in the neural complex of Ciona intestinalis: Receptor and enzyme genes associated with endocrine system in the neural complex

General and Comparative Endocrinology

journal-article

Gene expression profile during the life cycle of the urochordate Ciona intestinalis

Developmental Biology

journal-article

The evolutionary conservation of the core components necessary for the extrinsic apoptotic signaling pathway, in Medaka fish

Bmc Genomics

journal-article

Regulatory blueprint for a chordate embryo

Science

journal-article

Chromosomal mapping of 170 BAC clones in the ascidian Gona intestinalis

Genome Research

journal-article

Cloning and characterization of an ascidian homolog of the human 8-oxoguanine DNA glycosylase (Ogg1) that is involved in the repair of 8-oxo-7,8-dihydroguanine in DNA in Ciona intestinalis

International Journal of Radiation Biology

journal-article

Gene regulatory networks for the development and evolution of the chordate heart

Genes & Development

journal-article

Genomic overview of mRNA 5 '-leader trans-splicing in the ascidian Ciona intestinalis

Nucleic Acids Research

journal-article

Systematic analysis of embryonic expression profiles of zinc finger genes in Ciona intestinalis

Developmental Biology

journal-article

Urochordate genomes

Vertebrate Genomes

journal-article

A Genome-Wide Survey of Genes for Enzymes Involved in Pigment Synthesis in an Ascidian, Ciona intestinalis

Zoological Science

journal-article

A bHLH transcription factor gene, Twist-like1, is essential for the formation of mesodermal tissues of Ciona juveniles

Developmental Biology

journal-article

A saturation screen for cis-acting regulatory DNA in the Hox genes of Ciona intestinalis

Proceedings of the National Academy of Sciences of the United States of America

journal-article

An integrated database of the ascidian, Ciona intestinalis: Towards functional genomics

Zoological Science

journal-article

Assembly of polymorphic genomes: Algorithms and application to Ciona savignyi

Genome Research

journal-article

Cataloging transcription factor and major signaling molecule genes for functional genomic studies in Ciona intestinalis

Development Genes and Evolution

journal-article

Ci-Tbx6b and Ci-Tbx6c are key mediators of the maternal effect gene Ci-macho1 in muscle cell differentiation in Ciona intestinalis embryos

Developmental Biology

journal-article

Comprehensive analysis of the ascidian genome reveals novel insights into the molecular evolution of ion channel genes

Physiological Genomics

journal-article

Dynamic changes in developmental gene expression in the basal chordate Ciona intestinalis

Development Growth & Differentiation

journal-article

Microarray analysis of localization of maternal transcripts in eggs and early embryos of the ascidian, Ciona intestinalis

Developmental Biology

journal-article

The cell death machinery controlled by Bax and Bcl-XL is evolutionarily conserved in Ciona intestinalis

Apoptosis

journal-article

A zinc finger transcription factor, ZicL, is a direct activator of Brachyury in the notochord specification of Ciona intestinalis

Development

journal-article

Fluorescent in situ hybridization to ascidian chromosomes

Zoological Science

journal-article

Gene expression profiles of transcription factors and signaling molecules in the ascidian embryo: towards a comprehensive understanding of gene networks

Development

journal-article

Identification of downstream genes of the ascidian muscle determinant gene Ci-macho1

Developmental Biology

journal-article

Identification of transcripts expressed preferentially in Hemocytes of Ciona intestinalis that can be used as molecular markers

DNA Research

journal-article

T-box genes in the ascidian Ciona intestinalis: Characterization of cDNAs and spatial expression

Developmental Dynamics

journal-article

Tachykinin and tachykinin receptor of an ascidian, Ciona intestinalis - Evolutionary origin of the vertebrate tachykinin family

Journal of Biological Chemistry

journal-article

The ascidian Mesp gene specifies heart precursor cells

Development

journal-article

The evolutionary origin of animal cellulose synthase

Development Genes and Evolution

journal-article

Three distinct lineages of mesenchymal cells in Ciona intestinalis embryos demonstrated by specific gene expression

Developmental Biology

journal-article

A Twist-like bHLH gene is a downstream factor of an endogenous FGF and determines mesenchymal fate in the ascidian embryos

Development

journal-article

A genomewide survey of developmentally relevant genes in Ciona intestinalis - I. Genes for bHLH transcription factors

Development Genes and Evolution

journal-article

A genomewide survey of developmentally relevant genes in Ciona intestinalis - II. Genes for homeobox transcription factors

Development Genes and Evolution

journal-article

A genomewide survey of developmentally relevant genes in Ciona intestinalis - III. Genes for Fox, ETS, nuclear receptors and NF kappa B

Development Genes and Evolution

journal-article

A genomewide survey of developmentally relevant genes in Ciona intestinalis - IV. Genes for HMG transcriptional regulators, bZip and GATA/Gli/Zic/Snail

Development Genes and Evolution

journal-article

A genomewide survey of developmentally relevant genes in Ciona intestinalis - IX. Genes for muscle structural proteins

Development Genes and Evolution

journal-article

Genomewide surveys of developmentally relevant genes in Ciona intestinalis

Development Genes and Evolution

journal-article

A genomewide survey of developmentally relevant genes in Ciona intestinalis - V. Genes for receptor tyrosine kinase pathway and Notch signaling pathway

Development Genes and Evolution

journal-article

A genomewide survey of developmentally relevant genes in Ciona intestinalis - VI. Genes for Wnt, TGF beta, Hedgehog and JAK/STAT signaling pathways

Development Genes and Evolution

journal-article

A genomewide survey of developmentally relevant genes in Ciona intestinalis - VII. Molecules involved in the regulation of cell polarity and actin dynamics

Development Genes and Evolution

journal-article

A genomewide survey of developmentally relevant genes in Ciona intestinalis - VIII. Genes for PI3K signaling and cell cycle

Development Genes and Evolution

journal-article

A genomewide survey of developmentally relevant genes in Ciona intestinalis - X. Genes for cell junctions and extracellular matrix

Development Genes and Evolution

journal-article

Ascidian larva reveals ancient origin of vertebrate-skeletal-muscle troponin I characteristics in chordate locomotory muscle

Molecular Biology and Evolution

journal-article

Ciona intestinalis: an emerging model for whole-genome analyses

Trends in Genetics

journal-article

Construction of a cDNA microarray derived from the ascidian Ciona intestinalis

Zoological Science

journal-article

Expression of FoxE and FoxQ genes in the endostyle of Ciona intestinalis

Development Genes and Evolution

journal-article

Hemocytes of Ciona intestinalis express multiple genes involved in innate immune host defense

Biochemical and Biophysical Research Communications

journal-article

Large scale EST analyses in Ciona intestinalis - Its application as Northern blot analyses

Development Genes and Evolution

journal-article

Large-scale characterization of genes specific to the larval nervous system in the ascidian Ciona intestinalis

Genesis

journal-article

Morpholino-based gene knockdown screen of novel genes with developmental function in Ciona intestinalis

Development

journal-article

Novel endostyle-specific genes in the ascidian Ciona intestinalis

Zoological Science

journal-article

Retinoic acid affects gene expression and morphogenesis without upregulating the retinoic acid receptor in the ascidian Ciona intestinalis

Mechanisms of Development

journal-article

The invertebrate ancestry of endocannabinoid signalling: an orthologue of vertebrate cannabinoid receptors in the urochordate Ciona intestinalis

Gene

journal-article

A cDNA resource from the basal chordate Ciona intestinalis

Genesis

journal-article

An essential role of a FoxD gene in notochord induction in Ciona embryos

Development

journal-article

Ciona intestinalis cDNA projects: expressed sequence tag analyses and gene expression profiles during embryogenesis

Gene

journal-article

Construction of BAC libraries derived from the ascidian Ciona intestinalis

Genes & Genetic Systems

journal-article

EST analysis of gene expression in testis of the ascidian Ciona intestinalis

Molecular Reproduction and Development

journal-article

Early embryonic expression of FGF4/6/9 gene and its role in the induction of mesenchyme and notochord in Ciona savignyi embryos

Development

journal-article

Expression of hedgehog genes in Ciona intestinalis embryos

Mechanisms of Development

journal-article

Fgf genes in the basal chordate Ciona intestinalis

Development Genes and Evolution

journal-article

Further characterization of genes expressed during Ciona intestinalis metamorphosis

Differentiation

journal-article

Gene expression profiles in Ciona intestinalis cleavage-stage embryos

Mechanisms of Development

journal-article

Gene expression profiles in tadpole larvae of Ciona intestinalis

Developmental Biology

journal-article

Gene expression profiles in young adult Ciona intestinalis

Development Genes and Evolution

journal-article

Multiple functions of a Zic-like gene in the differentiation of notochord, central nervous system and muscle in Ciona savignyi embryos

Development

journal-article

Region specific gene expressions in the central nervous system of the ascidian embryo

Mechanisms of Development

journal-article

The draft genome of Ciona intestinalis: Insights into chordate and vertebrate origins

Science

journal-article

macho-1-related genes in Ciona embryos

Development Genes and Evolution

journal-article

Action of morpholinos in Ciona embryos

Genesis

journal-article

Brachyury (T) gene expression and notochord development in Oikopleura longicauda (Appendicularia, Urochordata)

Development Genes and Evolution

journal-article

Ci-opsin1, a vertebrate-type opsin gene, expressed in the larval ocellus of the ascidian Ciona intestinalis

Febs Letters

journal-article

Early embryonic expression of a LIM-homeobox gene Cs-lhx3 is downstream of beta-catenin and responsible for the endoderm differentiation in Ciona savignyi embryos

Development

journal-article

Gene expression profiles in Ciona intestinalis tailbud embryos

Development

journal-article

Isolation and characterization of genes that are expressed during Ciona intestinalis metamorphosis

Development Genes and Evolution

journal-article

Profiles of maternally expressed genes in fertilized eggs of Ciona intestinalis

Developmental Biology

journal-article

Characterization of Brachyury-downstream notochord genes in the Ciona intestinalis embryo

Developmental Biology

journal-article

Muscle actin genes and muscle cells in the appendicularian, Oikopleura longicauda: Phylogenetic relationships among muscle tissues in the Urochordates

Journal of Experimental Zoology

journal-article

beta-catenin mediates the specification of endoderm cells in ascidian embryos

Development

journal-article

Developmental gene activities in ascidian embryos

Current Opinion in Genetics & Development

journal-article

Expression cloning of an ascidian syndecan suggests its role in embryonic cell adhesion and morphogenesis

Developmental Biology

journal-article

Identification and characterization of maternally expressed genes with mRNAs that are segregated with the endoplasm of early ascidian embryos

International Journal of Developmental Biology

journal-article

posterior end mark 3 (pem-3), an ascidian maternally expressed gene with localized mRNA encodes a protein with Caenorhabditis elegans MEX-3-like KH domains

Developmental Biology

journal-article

Isolation and characterization of cDNA clones for epidermis-specific and muscle-specific genes in Ciona savignyi embryos

Zoological Science

journal-article

Maternal genes with localized mRNA and pattern formation of the ascidian embryo

Cold Spring Harbor Symposia on Quantitative Biology

journal-article

posterior end mark 2 (pem-2), pem-4, pem-5, and pem-6: Maternal genes with localized mRNA in the ascidian embryo

Developmental Biology

journal-article

An intrinsic genetic program for autonomous differentiation of muscle cells in the ascidian embryo

Proceedings of the National Academy of Sciences of the United States of America

journal-article

Two cis-regulatory elements are essential for the muscle-specific expression of an actin gene in the ascidian embryo

Development Growth & Differentiation

journal-article

TIMING OF INITIATION OF MUSCLE-SPECIFIC GENE-EXPRESSION IN THE ASCIDIAN EMBRYO PRECEDES THAT OF DEVELOPMENTAL FATE RESTRICTION IN LINEAGE CELLS

Development Growth & Differentiation

journal-article